Tim Triche, Jr.

An obvious question is whether the relationship between data and outcomes of interest is nonlinear, and whether previous efforts to apply deep learning to the domain have been successful (e.g....

I frequently get comments from investigators along the lines of "that's true for statistical power... which is why we want to use an AI technique". So for example I'll suggest...

Oh, that works. Maybe something like %neighbors% instead? --t On Tue, Sep 6, 2016 at 1:13 AM, Gábor Csárdi [email protected] wrote: > Yes, I am afraid that we already use...

Alright I updated my pull request to call it `%around%`, i.e. `around.igraph(g, v) == g %around% v`. `%ego%` didn't seem like the best choice because the `ego(g, 1, v)` function...

of course most of the time that's how an operator is implemented anyhow (elsewhere in igraph too) ``` around.igraph

See TxDbLite for a way to do this directly from Ensembl FASTA files. Tested on mouse and human v80 and v81, cDNA and ncRNA. Exon mapping requires the GTF. I'll...

ENST-to-Reactome mappings (transcript level) are rather sparse (usually only the canonical isoform is annotated) so it may actually be hurting you to operate at the tx level. We found this...

any news on this before I write it? :-)

nevermind, it looks like bedtools slop does this anyhow (at least in 2.2.0) thanks! Statistics is the grammar of science. Karl Pearson http://en.wikipedia.org/wiki/The_Grammar_of_Science On Wed, Sep 17, 2014 at 1:36...

eh, I may just use pandas on the bedGraph then ;-) Statistics is the grammar of science. Karl Pearson http://en.wikipedia.org/wiki/The_Grammar_of_Science On Wed, Sep 17, 2014 at 2:22 PM, Aaron Quinlan...