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Using MTAG to enhance the GWAS ability

Hello Patrick Thanks for your reply. Yes, I think the results for rep_1 is spurious. The Manhattan plots for GWAS and MATG as well as the log file were attatched....

Using MTAG to enhance the GWAS ability

Hello Patrick Thanks for your reply. I find that the mean chr^2 of my GWAS results for all the traits were less than 1. My phenotype data includes plant height,...

Using MTAG to enhance the GWAS ability

I have more than 1000 samples which are relatively large for maize population.Is there other problems？Thank youTian在 2024年5月22日，18:49，paturley ***@***.***> 写道： Mean chi2 is both a function of heritability and sample...

Using MTAG to enhance the GWAS ability

OK，Thank you very much.All the best,Tian在 2024年5月22日，19:07，paturley ***@***.***> 写道： 1000 may be large for maize samples, but it doesn't appear to be large enough for MTAG, which requires mean chi2...