Kirill Tsukanov

Graph autoscale is broken in cnvkit scatter v0.9.5

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When plotting homozygous deletions with large negative Z scores: ```bash cnvkit.py scatter -o autoscale.png -c chr22:39378286-39388064 -s autoscale.cns autoscale.cnr ``` Graph gets distorted on its Z score axis:  Files...

Currently, some aspects of how VCF samples are loaded and processed are a bit obscure in the documentation. This especially applies to things like BAF rescaling and LOH detection; see...

Possible duplication between HP_0001332 "Dystonia" and MONDO_0003441 "dystonic disorder"

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There are two separate terms in EFO, one imported from HPO and another from MONDO: * **Dystonia:** https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHP_0001332 * **dystonic disorder:** https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMONDO_0003441 I'm not entirely sure, but it looks like...

Hi, while working with the replacements for obsolete terms we noticed that there are some obsolete terms in `efo_otar_slim.owl` where the replacement term is not contained in that same file...

The BioCypher meta-graph link in the documentation appears to be down

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Hi! In the [Adapters → BioCypher meta-graph section](https://biocypher.org/adapters.html#biocypher-meta-graph), there's a link to “Online meta-graph” which points to https://meta.biocypher.org/. This page appears to be down: https://downforeveryoneorjustme.com/meta.biocypher.org