Torsten Seemann
Torsten Seemann
Was wondering if you could support extra columns in the inpuit file which designate samples as NTC, PTC and PASS and FAIL. The idea is that PTC and NTC should...
When i run `bohra -c contigs.txt` bohra does not fail if `contifs.txt` does not exist. I think it *should* fail, because the user clearly asked you to use it. If...
When looking at the report HTML with a large numbner of samples I could not figure out whow to count how many samples were present. Could you add a "count"...
A recent HTML report has no value in the "Version" column for the `Prokka` command. All the others are fine. ``` % cat version_prokka.txt tool conda_env version prokka /home/usera/miniconda3/envs/bohra-prokka```
I've noticed lately that the SNP density plot doesn't work? 
I can't see the version of bohra used in the report. I looked at Versions tab, and Pipeline Details tab.
Can we support different tree building tools? Alignment based: * iqtree (alredy supported?) * raxml-ng * fasttree * veryfasttree (version 4 in conda much improved) Distance based: * quicktree *...
We need to store the DOI or PMID of each tool Bohra uses to make it easier for users to get a list of software they used and paste into...
I beleive bohra 2.x is now modular. Could bakta be added as an annotation option? (instead of prokka) It noe comes with a "light" database that is very small but...
The release notes imply babykraken could actually be used for real work. Please make sure you make it crystal clear that it is a stop-gap (?) to help bohra work...