Torsten Seemann

I think you are asking for the `abricate --summary` to have the number 0, 1, 2 etc instead of the % values? This could be made an option.

@rohansachdeva haven't had much time. Would you have a link to an *assembled* metagenome that would have representatives from multiple kingdoms?

It's theoretically possible. The main risk is that the user ran `--mincov 90` on some of the individual reports then runs `--mincov 80` on the summary report - this won't...

Most of the databases Abricate use are >500 genes but yes it is true I never expected to get >500 hits. This sounds like a setting in BLAST. I will...

BINGO. ``` % blastn -help | grep -C 3 500 -num_descriptions =0> Number of database sequences to show one-line descriptions for Not applicable for outfmt > 4 Default = `500'...

@julie-bio ``` . " -evalue 1E-20 -culling_limit $CULL" + . " -max_target_seqs 10000" # https://github.com/tseemann/abricate/issues/135 ``` Can you try 1.0.1 or add that line and see if it resolves the...

EUCAST Antimicrobial agent abbreviations - they have a guidance document and table! [EUCAST_system_for_antimicrobial_abbreviations.pdf](https://github.com/tseemann/abricate/files/3765104/EUCAST_system_for_antimicrobial_abbreviations.pdf)

CARD uses sentences for its products unfortunately, not simple gene names. I can't fix that. Complain to them directly at https://github.com/arpcard/amr_curation :-) You should get normal looking `RESISTANCE` column in...

It's a good question @crarlus - `tblastn` could just be a drop in replacement, but there is lots of business logic that assumes DNA coordinates etc. What database do you...

I have started adding `tblastn` support but it is **extremely** slow due to the way I am using the genome as they query... it's not committed yet.