Torsten Seemann

🎉 New formula trimmomatic in Brewsci/bio for Linux and MacOS! 🍺 brew install brewsci/bio/trimmomatic 🏠 http://www.usadellab.org/cms/?page=trimmomatic 📖 https://doi.org/10.1093/bioinformatics/btu170

🎉 New formula panito in Brewsci/bio for Linux and MacOS! 🍺 brew install brewsci/bio/panito 🏠 https://github.com/sanger-pathogens/panito

🎉 New formula gzstream in Brewsci/bio for Linux and MacOS! 🍺 brew install brewsci/bio/gzstream 🏠 https://www.cs.unc.edu/Research/compgeom/gzstream/

I would just try with `k=15` and see how it goes. For illumina data i would just use R1 and ignore R2 as it is noisier and won't add any...

Ok, i figured out what needs to be doen https://github.com/brewsci/homebrew-bio/pull/363 1. The `if` is for Darwin + Clang 2. The `else is for Linux + GCC You need a 3rd...

Any movement on this?

Which has priority?

@bjpop - this could be in the python README if it isn't already?

One option could be to use a random seed by default in `samtools`. but this is probably a bad idea for reproducibility. What is the reason for the behaviour? Are...

Except NCBI (SRA) rename the reads you upload. You can recover the original IDs but you need to specify `--origfmt` or similar in `fastq-dump`.