cgmlst-dists
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tseemann
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
we have investigated the issue with cgmls-dists in handling large input files (the error has been reported with 80k Lm samples) . The tool goes in segmentation fault. The bug...
``` ERROR: could not allocate 18014398504767799 kb RAM ```
chewBBACA recently got an update that includes a feature to output hashed sequences instead of allele numbers. Since cgmlst-dists has specific filters for the input data, it is incompatible with...
The cleanup step, replaces non-numeric values with an empty string. In the event that an inferred allele ID is present results in a negative value for the allele id (INF-8...
Currently due to triangle mode, row is non-linear Currently goes fast to slow.
Once #1 is done, you can use openMP