PyPythia
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tschuelia
Lightweight python library for predicting the difficulty of alignments in phylogenetics
Hi Julia: I am running the latest version, and I found this error: ``` Traceback (most recent call last): File "/mnt/shared/scratch/cbitenco/apps/conda/bin/pythia", line 8, in sys.exit(main()) File "/mnt/shared/scratch/cbitenco/apps/conda/lib/python3.9/site-packages/pypythia/prediction.py", line 314, in...
Referencing from issue #13 : Question by @liamxg > Dear @tschuelia, if the predicted difficulty for MSA is: 0.64, it is very hard or hard?
Dear @tschuelia, I tried many times, still can not use it, Is there any easy way to install it? pythia -h Traceback (most recent call last): File "/Users/liamxg/opt/miniconda3/envs/pythia/bin/pythia", line 6,...
Dear @tschuelia, if the predicted difficulty for MSA is: 0.64, it is very hard or hard? Edit from @tschuelia: The original issue was: ``` Dear @tschuelia I have error: (base)...
Fix a bug of the logger timer causing this error for runs of more than an hour: ``` Traceback (most recent call last): File "/home/fdecarpentier/Documents/FrankenPhylo/FufaStein/.snakemake/conda/7ddc770da26d7b8f4436aadb4e950c55_/bin/pythia", line 10, in sys.exit(main()) ~~~~^^...
Dear @tschuelia, Thanks for the update on Pythia! I was wondering if this (or the old) version of pythia can handle a concatenated alignment of nucleotides and aminoacid sequences? If...
