Taylor Salo

I agree that outputting pre-SDC echo-wise derivatives shouldn't be a high priority. Outputting post-SDC echo-wise derivatives _and_ running tedana on those files within the workflow sounds like a clean way...

Sorry for the delay. For the sake of _using_ ME data, I don't think there's any benefit to outputting the T2* map in anything other than the space in which...

What I ended up doing in the fork I'm using for that analysis is to assume that all voxels in any user-provided mask has good data in at least the...

>For your fork, what if you assume the first echo only is good and you'd remove voxels that drop too much from the first to second echo? My biggest issue...

@ME-ICA/tedana-devs does anyone have an issue with this? I could get a PR done pretty quickly if everyone is okay with it.

@notZaki thanks for the info about svg files. I am not as familiar with the different formats so it's great to have the drawbacks compiled. It sounds like we should...

Both look great. I have some notes though. For the metric workflow: - `kappa ratio` is calculated within the decision tree, so it might be misleading to include it in...

It would also be nice to have a publication-ready top-level figure like [this one](https://raw.githubusercontent.com/oesteban/fmriprep/38a63e9504ab67812b63813c5fe9af882109408e/docs/_static/fmriprep-workflow-all.png), with brains and things.

I'm working a bit on the JOSS manuscript and was wondering if anyone had made any progress on the static publication-quality figure (rather than the dynamically-generated workflow graphs we're interested...

I don't think we need that level of detail. I was thinking something more aesthetically pleasing, with a top-level schematic of the workflow, like this: