wholebrain
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tractatus
R package for segmentation, registration and generating web-based brain atlases from microscope images
 I got an error at last step.
Hello, I am having some issues installing the software. I am using MacOS Mojave 10.14.6. I am using OpenCV version 4.1.0_1. The error I receive is: ```` installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/wholebrain/libs...
I would like to apply the image registration to brain images in which we have independently identified the cells. We have the coordinates of each cell stored in tabular format,...
in the correspondance.R when calling getIntersection(), it returns c(x1,y1)) or c(x1,y1,x2,y2)). but it reports a warning in getIntersectwithContour() when getIntersection() returns c(x1,y1,x2,y2)). in some situations, with too many this kind...
Hello :) I've been working on installing wholebrain on freshly installed ubuntu 18.04 and I wanted to offer an improvement to the [instructions](http://www.wholebrainsoftware.org/cms/installing-wholebrain-on-ubuntudebian/) on your website. 1) installing opencv could...
 as the image,when i floow the steps,but there is no " CMAKE_MAKE_PROGRAM" key ,i do not how to do it ,Could you help me?
I am using easybuild 4.4.2 tryiung to install R-4.1.0 The issue is package with Xvfb-1.20.11-GCCcore-10.3.0.eb The package fails on installing bundle component Xvfb v1.20.11 (9/9) This is compiling xorg-server-1.20.11 which...
while using imshow() with the example pics, it works fine for 16-bit depth tif. but it can't adjust my 8-bit depth tif even with the toolbar marked with 8-bit render....
Hello Sir, Thank you very much for your work. I 'm very interested in implementing your project. I followed your instructions in the website, and it seems I have no...
Great tool! I am curious, is whole-brain able to align sections with severe dorso-ventral skew? as in can we select arbitrary planes through the reference atlas or only warp a...
