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Targeted genotyper for complex polymorphic genes

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Locityper

Last updated Last release Bioconda

Locityper is targeted genotyper for polymorphic genes based on short- and long-read whole genome sequencing.

Locityper is created by Timofey Prodanov timofey.prodanov[at]hhu.de and Tobias Marschall tobias.marschall[at]hhu.de at the Marschall Lab, Heinrich Heine University Düsseldorf.

Please find installation instructions, test dataset and other information at locityper.vercel.app.

Additional scripts for benchmarking can be found at github.com/tprodanov/locityper-bench.