dotPlotly
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tpoorten
Generate an interactive dot plot from mummer or minimap alignments
Hi, I installed dotploty and i am trying to run the examples provided. But both the minimap2 and the nucmer example seem to have some issues. [minimap2_failed_output.txt](https://github.com/tpoorten/dotPlotly/files/5589602/minimap2_failed_output.txt) [mummer_failed_output.txt](https://github.com/tpoorten/dotPlotly/files/5589603/mummer_failed_output.txt) What am...
Hello! I am trying to use dotPlotly to compare a PacBio long read de novo assembly (produced with PacBio's assembler IPA) to a reference genome to visualize structural variations. I...
When I aligned two maize genomes, the paf file contained incomplete lines that will convert numeric columns to characters, then the script crashed becasue it was not expecting characters. I...
Hi there, I have installed Dotplotly and I try to run it using my data but I get this error (the same error occurs when running dotplotly on the example...
Hey there, I am trying to create a dotplot of an alignment I made with minimap, I converted the minimap output (sam format) to a paf format and tried running...
Hello, May I sort the dot plot graph by the name of chromosomes from the genome reference? thank you!
Hi, I've got the following error saying " object 'tickvals' not found". I can actually obtain the picture in png format already, but cannot generate an interactive html figure. Maybe...
Hello, thanks for the wonderful tool. I just wondered why in your example, using the same dataset but different tools, the mean percent identity looks so different? The one from...
Hi, it seems that the mean percent identity per query is taken independent of the length of the hits. For example the following contig from the coordinate file is displayed...
