Sort chromosomes by name

[jhtrujillo]

Hello,

May I sort the dot plot graph by the name of chromosomes from the genome reference?

thank you!

[WTarabidopsis]

Hi, have you solved this problem? I also want to order the chromosomes as I like, but dotPlotly is always sorted based on its on method.

[jhtrujillo]

Hi, have you solved this problem? I also want to order the chromosomes as I like, but dotPlotly is always sorted based on its on method.

I couldn't do it using this tool. After several attempts, I succeeded using Synmap.

[WTarabidopsis]

Hi, have you solved this problem? I also want to order the chromosomes as I like, but dotPlotly is always sorted based on its on method.

I couldn't do it using this tool. After several attempts, I succeeded using Synmap.

Thanks so much!

[aaronphillips7493]

There's a part of the .R script that sorts the target sequence by size. I tried running the script without this part but the result of the sort is needed in subsequent steps down the line. I am in a hurry to re-submit a manuscript that uses dotPlotly and don't know enough R coding to be able to quickly fix this. The reviewers were confused by the ordering. Can the devs please propose a solution?

[chywish]

There's a part of the .R script that sorts the target sequence by size. I tried running the script without this part but the result of the sort is needed in subsequent steps down the line. I am in a hurry to re-submit a manuscript that uses dotPlotly and don't know enough R coding to be able to quickly fix this. The reviewers were confused by the ordering. Can the devs please propose a solution?

hi, you can try with the -r opition to solve the problem of the target chromsome order number .