Thomas Pfau

Results 9 issues of Thomas Pfau

Adding support for additional annotations in SBML export. **I hereby confirm that I have:** - [X] Tested my code on my own machine - [X] Followed the guidelines in the...

I was trying to optimize the GPR parsing code using existing implementations for boolean formula/sat solving processors and found one oddity in some formulas: There are sometimes genes which have...

When initializing dynamic FBA it assumes, that exchange reactions which can take up metabolites and are assigned a 0 concentration will be non limiting. Essentially, those initial concentrations are set...

help wanted

Currently, `optimizeCbModel` returns a solution with plenty of fields which are redundant e.g. v, x, full for the variable value f, obj for the objective value Which are partially undocumented...

on hold

I tried to write a test for checkConsistency and findStoichConsistentSubset using the following network: ``` % A -----> B ---> C --> E % \ ^ % \ / %...

This is somewhat related to #223. I'm currently trying to include some js verticles into a bigger java project. As a minimal example I have a helloVert.js : ``` vertx.eventbus().consumer("hello.vertx",...

bug

#### Problem description This is nothing directly to do with memote directly, but since memote aims at improving model quality, I think it will reach the right people here. When...

If you do not know the root cause of the problem / bug, and wish someone to help you, please post according to this template: ## 🐛 Bugs / Unexpected...

This PR adds the `stream_options` and `include_usage` fields as defined in the OpenAI API reference to the server. Set to false by default they can be activated which leads to...