Toufiq comments

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                                            Toufiq

Setting number of epochs

I have been able to sort it out. Thank you very much > Hi @toufiqmusah. You would have to create a new Trainer class by inheriting from `nnUNetTrainerv2` and insert...

The models created by functions such as create_mednext_v1 or create_mednextv1_large... cannot be used normally.

To the best of my understanding, MedNext was specifically designed and tested on 3D inputs. From the readme, create_mednext_v1 has no indication of supporting 2D inputs. For 2D inputs I'd...

How to Test a Trained Model

try running this command from the your base dir: `python mednext/nnunet_mednext/inference/predict.py -i imagesTs -o MedNext_Predictions -m 3d_fullres -f 4`

RuntimeError: Could not find a task with the ID

Hi.. Are you using nnUnetv2? Can you print and display your file structure here with `!tree`?

RuntimeError: Could not find a task with the ID

Alright email me toufiqmusah32 at gmail

Is there a way to perform inference on models with custom trainer classes that doesn't require modifying `nnunetv2` package files?

> Hey is there any update on this? Thanks I've been able to make some 'work arounds' for this. lmk if interested ..

Is there a way to perform inference on models with custom trainer classes that doesn't require modifying `nnunetv2` package files?

Great .. I'm sure you'll be familiar with most of what I'm about to say. (Love your group's work @ neuropoly, by the way). Install nnunetv2 as an editable .....

Is there a way to perform inference on models with custom trainer classes that doesn't require modifying `nnunetv2` package files?

Thanks for clarifying @joshuacwnewton. I may have misunderstood from the start. I will let you know if/when I get something on the issue? Will it be possible to make a...

Sorry this is coming so late. Here is an example for creating the MedNeXt json (nnunetv1 style) for BraTS: Source: [nnunet_mednext/dataset_conversion/utils.py](https://github.com/MIC-DKFZ/MedNeXt/blob/0b78ed869fbd1cc2fd38754d2f8519f1b72d43ba/nnunet_mednext/dataset_conversion/utils.py#L27) ``` import os import json import numpy as np...