SBML topic

SBML (the Systems Biology Markup Language) is an XML-based format for communicating and storing representations of biological processes. Its aim is to be a lingua franca for representing models in biology. SBML is suitable for models commonly found in research on a number of topics, including cell signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others.

List SBML repositories

libsbml

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LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaSc...

cbmpy

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CBMPy is a Python based platform for constraint based modelling and analysis.

KEGGtranslator

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A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.

sbmlutils

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Python utilities for SBML

EscherConverter

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A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.