protein-engineering topic
lantern
Interpretable genotype-phenotype landscape modeling
PyPEF
PyPEF – Pythonic Protein Engineering Framework
EvoProtGrad
Directed evolution of proteins in sequence space with gradients
PoET
Inference code for PoET: A generative model of protein families as sequences-of-sequences
ProtSSN
Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024).
automancer
Automancer is a software application that enables researchers to design, automate, and manage their experiments.
ProteinLM-TDG2-Mutation
Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing