digital-pathology topic

List digital-pathology repositories

cellseg_models.pytorch

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Encoder-Decoder Cell and Nuclei segmentation models

FocusLiteNN

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Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

H2G-Net

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🚀 H2G-Net: Segmentation of breast cancer region from whole slide images

wsidicom

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Python package for reading DICOM WSI file sets.

LabelSlide

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LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

fast-stain-normalization

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:star2: GPU-accelerated stain normalization command line tool

SSL_CR_Histo

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Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

ICCV-CDPATH2021-ID-8

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Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Pathology", ICCV, 2021, CDpath Workshop (Oral).

style-transfer-for-digital-pathology

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Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation

WSIPenMarkingRemoval

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Remove pen-marking annotations on whole slide images(WSIs) for data achiving.