digital-pathology topic

List digital-pathology repositories

FAST

415
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A framework for high-performance medical image processing, neural network inference and visualization

tiatoolbox

330
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Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

paquo

99
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PAthological QUpath Obsession - QuPath and Python conversations

adaptive_color_deconvolution

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adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"

slim

110
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Interoperable web-based slide microscopy viewer and annotation tool

tiffslide

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TiffSlide - cloud native openslide-python replacement based on tifffile

NoCodeSeg

47
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15
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🔬 Code-free deep segmentation for computational pathology

torchstain

103
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20
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Stain normalization tools for histological analysis and computational pathology

WSITools

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Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.