digital-pathology topic
FAST
A framework for high-performance medical image processing, neural network inference and visualization
tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
paquo
PAthological QUpath Obsession - QuPath and Python conversations
adaptive_color_deconvolution
adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"
slim
Interoperable web-based slide microscopy viewer and annotation tool
tiffslide
TiffSlide - cloud native openslide-python replacement based on tifffile
NoCodeSeg
🔬 Code-free deep segmentation for computational pathology
torchstain
Stain normalization tools for histological analysis and computational pathology
WSITools
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.