bionlp topic
BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
BLUE_Benchmark
BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
covid-papers-browser
Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠📖
kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
nalaf
NLP framework in python for entity recognition and relationship extraction
Multi-BioNER
Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
Existing-Medical-QA-Datasets
Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
sapbert
[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
MEDIQA2019
Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019
biosemble
AI assembly of bioNLP wordnets