bionlp topic

List bionlp repositories

BioSentVec

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BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

BLUE_Benchmark

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BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

covid-papers-browser

183
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Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖

kindred

156
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A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).

nalaf

115
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NLP framework in python for entity recognition and relationship extraction

Multi-BioNER

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28
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Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)

Existing-Medical-QA-Datasets

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Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems

sapbert

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[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

MEDIQA2019

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Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019