biology topic

List biology repositories

intermine

249
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351
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A powerful open source data warehouse system

ncbi-genome-download

899
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172
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Scripts to download genomes from the NCBI FTP servers

pyGeno

308
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52
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Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

chemicalx

699
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89
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A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

TDC

941
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168
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Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science

pyfastx

241
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19
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a python package for fast random access to sequences from plain and gzipped FASTA/Q files

BioAmp-EXG-Pill

242
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57
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BioAmp EXG Pill is a small and elegant Analog Front End (AFE) board for BioPotential signal acquisition.

Catalyst.jl

427
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71
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Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

bioicons

1.2k
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67
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A library of free open source icons for science illustrations in biology and chemistry

chainer-chemistry

614
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129
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Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry