biological-simulations topic

Blue Brain Python Optimisation Library

BlueBrain

Brian is a free, open source simulator for spiking neural networks.

brian-team

Brain Dynamics Programming in Python

brainpy

Evoplex is a fast, robust and extensible platform for developing agent-based models and multi-agent systems on networks. It's available for Windows, Linux and macOS.

evoplex

:space_invader: JS library for simple biological simulations and cellular automata

rileyjshaw

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

opensim-org

Brain models implementation with BrainPy

PKU-NIP-Lab

A brian2 extension to simulate spiking neural networks on GPUs

brian-team

Random walk to calculate the tortuosity tensor of images

PMEAL

An epithelium simulation library

DamCB