Tom White
Tom White
Maybe as a section on https://pystatgen.github.io/sgkit/latest/contributing.html?
Sorry I missed this originally. Would you like to submit a PR to make these improvements @elfring?
Hi @LiangdeLI - a few thoughts below: * How big is `output.zarr`? * It's best to create the Dask `Client` as the first line of your program, otherwise there's a...
Some of these apply to VCF too.
This and #629 are the only issues remaining for the 0.3.0 release. @eric-czech do you think you'll have a chance to look at this, or should we go ahead with...
I think we should add some helper functions to provide some of the region queries discussed in this issue, since they are non-trivial to do with the Xarray API. There...
@jeromekelleher, yes - and more generally something that is fast using tabix is slower in sgkit. I haven't tried timing anything, it was just a concern that we may need...
No objections, but would it be possible to have sgkit export in tskit itself? sgkit is a light dependency...
Following the discussion in last week's call (#637), I put together some code to convert from tskit TreeSequences to Zarr files following sgkit conventions: https://github.com/pystatgen/sgkit/compare/main...tomwhite:ts_to_zarr. The code is just in...
> I think the simplest thing is for me to create a standalone "ga4gh-variant-sim" repo or something, where we just put the code to do this. Sounds good to me.