tomthun

Total ion current plot

1

- Describe the issue or question: I wanted to ask if there is a way to generate the total ion current (TIC) vs retention time for any peptide from the...

Support for tims tof data

13

Hi Michael, is there a plan to support tims tof data (.d format) in general and ion mobility? Best, Tom

Unable to retrieve sequence lengths from Ensembl

1

Hello, i have a problem creating an annotation file for Seurat with GetGrangesFromEnsDb(). While curating the single-cell experiments, a certain [GTF](https://ftp.ensembl.org/pub/release-97/gtf/mus_musculus/) was used for genomic annotations. When i try to...

Missing row intensities and entries

6

**Describe the bug** Some row entries are 0 for all replicates in the CustomDf.aq_reformat.ion_intensties even though there are valid values in the original CustomDf.aq_reformat input dataframe. Furthermore, there are row...