tomoakin

README.md says as such.: ## Assembly result. The final assembly scaffolds file is under CA/{primary,alternative}.scf.fasta or CA.mr...../{primary,alternative}.scf.fasta if CABOG assembler was used for contigging/scaffolding, which is default, or flye.mr....../assembly.scaffolds.fasta if...

Stack traces were collected for some of them. Calling Process_Olap (frag_len=65535 might be related in some cases? ``` Program terminated with signal SIGSEGV, Segmentation fault. #0 0x0000003d44e677e4 in ?? ()...

Another core (on a different system) ``` (gdb) info stack #0 0x00002b63b47df438 in __GI_raise (sig=sig@entry=6) at ../sysdeps/unix/sysv/linux/raise.c:54 #1 0x00002b63b47e103a in __GI_abort () at abort.c:89 #2 0x00002b63b48217fa in __libc_message (do_abort=do_abort@entry=2, fmt=fmt@entry=0x2b63b493955f...

Run the same dataset with MaSuRCa compiled with #define AS_READ_MAX_NORMAL_LEN_BITS 18 in global-1/CA8/src/AS_global.H ended without producing cores. Note the max read length in the dataset was over 200 kb but...

Because the fourth core https://github.com/alekseyzimin/masurca/issues/257#issuecomment-965074142 suggested a buffer overrun in Get_Canonical_Olap_Region, the context was looked in ``` static void Get_Canonical_Olap_Region (Olap_Info_t * olap, int sub, char * a_seq, char *...

What is meant by "I looked at the public schema"? If the table is referred as test_schema.iris_db the iris_db table is in test_schema schema https://www.postgresql.org/docs/13/ddl-schemas.html

I hope you have found some work arround. https://stackoverflow.com/questions/64210167/unable-to-connect-to-postgres-db-due-to-the-authentication-type-10-is-not-suppor

Alternatively you can compile the R library from source with the latest libpq with appropriate setup. I see that the accompanied libpq should be updated. But that takes some more...

Should pg_config in the PATH, the configure would call pg_config and set as such (not pkg-config).

postgresql-server-devel might contain the program pg_config in openSUSE.