Tommy Carstensen

Results 12 issues of Tommy Carstensen

Are you planning to make it compatible with Tensorflow 2? Thanks!

GATK HaplotypeCaller and samtools call these two SNPs at positions i and i+1 (i=763837) for sample NA12878: 20 763837 rs6085879 C T 0/1 20 763838 rs6085880 A G 1/1 In...

enhancement

Current syntax is: records = tb.querys("1:1000000-1250000") It would be great, if I could just get all variants on chromosome 1 by doing one of these: records = tb.querys("1") records =...

enhancement

It would be great to have an option ignore_order similar to what deepdiff has: https://pypi.org/project/deepdiff/

Type: new feature
Status: ready for work
Lane: help wanted

Can you add to the README what is the difference between jsondiff and json-diff? Thanks 🙂 https://pypi.org/project/json-diff/

These tests raise a warning with the latest version of Pandas: https://github.com/BioPandas/biopandas/blob/11362ec459d9c9c265d2f2416223569e9cf4fc93/biopandas/pdb/tests/test_multiple_models.py The specific warning is SettingWithCopyWarning: A value is trying to be set on a copy of a slice...

A coworker of mine saw a scatter plot making use of the `HoverTool`. She asked, if the position of the info box could be fixed. Could I kindly make this...

type: feature

Could the date for the update to version 2.0 be added to the Wiki page? https://github.com/bfo-ontology/BFO/wiki

This is an enhancement request. It would be great, if bcftools isec could support stdin input like this: bcftools isec -C

### What version of pyhdf, HDF4, and Python are you using? pyhdf version: N/A HDF4 C library version: 4.2.5 Python version: 3.7 ### What operating system are you using? OS...

installation
OS-Darwin