Tom Stanton

icon indicating a website link https://wyreslab.com/team/ icon indicating an email [email protected]

icon company Monash University icon location Melbourne icon location Microbial bioinformatics postdoc; mol bio background. - Monash/LSHTM/UoE/UKHSA - Triathlete/music production

Results 4 comments of Tom Stanton

Creating Locus References Database

Closing this issue as it's a question relating to database curation which is outlined in the docs.

GenBank output not found.

This can be built into `kaptive convert` if there is enough interest. `GeneResult` objects can be coerced into `Bio.SeqFeature` objects by adding the class method `as_seqfeature()` and `LocusPiece` objects can...

Graphical issues with the web server

Closing this issue as it refers to [Kaptive-Web](https://github.com/klebgenomics/Kaptive-Web)

Kaptive not found

Hi Hakon, We've recently updated Kaptive to version 3, however Kleborate v2 relies on the previous version of Kaptive so I've pinned the submodule to v2.9.0 (see 8fdcc96). Could you...