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                                            Tomas Kopsa

bwa compile failed at utils.c:29:10

stdio.h is one of fundamental C/C++ header files, usually located at /usr/include/ directory. You either need to instal libc-dev or reinstall gcc compiler.

Paired reads have different names

If bwa is terminated with this error, it usually signifies that pair reads in both FASTQ files are disordered. From BBTools Repair Guide: _With paired reads in 2 files, the...

Paired reads have different names

Hi @qiaowei-vvjoe are you sure your FASTQ files contains paired reads ?

Does not compile for ARM

bwa requires SSE2 instruction set. emmintrin.h is header file for SSE2 intrinsics. You are compiling the code for platform without SSE2 support.