nii2dcm

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EOFError: Compressed file ended before the end-of-stream marker was reached

2

nii2dcm F:\Datasets\nii\AF_cta\Site2\CT\1052519\untitled_original.nii.gz F:\Code\DeepLearning\GAN\CTA-GAN\data\Site2\CT\1052519/ please help me !

zhouweigogogo

dunamai RuntimeError and UnboundLocalError: local variable 'nZ' referenced before assignment

9

Thanks for your work on nii2dcm! I'm considering integrating this as part of my QSM processing toolbox, QSMxT. However, I'm having problems using it in my miniconda setup: ``` (qsmxt)...

astewartau

See https://github.com/tomaroberts/nii2dcm/issues/30

astewartau

AttributeError using reference dicom

3

Thanks @tomaroberts for your great package - using the cli if I add a reference image i get: ``` "/dcm_writer.py", line 89, in transfer_ref_dicom_series_tags for current_attribute in dcm.attributes_to_transfer: AttributeError: 'Dicom'...

benduffy1

Create GitHub Action to test running of nii2dcm

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- [x] create build_and_test_cli.yml - Build tests and upload test data for the following: - [ ] Dicom class - [ ] DicomMRI class - [x] DicomMRISVR class - Need...

tomaroberts

Related to #8 – need to improve class inheritance. Currently, the Dicom class is too MR biased. **TODO:** - [x] shift the `add_module()` calls to DicomMRI subclass - [ ]...

tomaroberts

Improve image contrast windowing in DICOM output

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Currently, when generating different types of DICOM (MRI, CT, different scanners, etc.) the intensity values/windowing in the output DICOM can be incorrect, e.g.: **Output DICOM contrast from input CT NIfTI...

tomaroberts

Need to update nii2dcm with proper logging. - Currently just some placeholder print() statements. - Implement log levels

tomaroberts

Realised that some DICOM Attributes are defined in more than one Module, e.g.: - `BitsAllocated` is defined in both Image Pixel Module and MR Image Module Current behaviour means that...

tomaroberts

Improve dcm_dictionary_update() implementation

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- Create and shift to utils.py - Or... create method within dcm.py Dicom class so that Date/Time can be called once during a DICOM creation run

tomaroberts