Téo Lemane

Hi Svenja, Some additional info: > > Is the search of kmtricks resp. HowDeSBT equivalent? Meaning that if I use kmtricks, the search timings and results are the same as...

> EDIT: We plan to test the tools on RefSeq (all complete genomes) and part of the 40k RNA Seq Files from the most recent Mantis paper. The use of...

Hi, The error seems to be related to the number of opened files. However, the first step (superk) should work with your configuration. Recently I got some feedback from users...

Hello Thank you for pointing this out. I have updated the documentation and the examples. You should be able to follow the pipeline now. Teo

Hello, Sorry for this issue. The problem seems to occur at an early stage of the process in an external library which basically reads a few sequences from each input...

Hi, Yes unfortunately safe parsing probably involves an undesirable overhead. I was thinking more about a quick consistency check on few lines before parsing. Of course, this doesn't guard against...

Hello, Thank you for the report. Indeed `sched_getaffinity` seems better. I will change in the next release.

Hello, Sorry for my late reply. Unfortunately, you are encountering a known kmtricks problem. Memory grows with the number of files, regardless of their sizes, which is not expected. I...