Pangolin
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tkzeng
Pangolin is a deep-learning method for predicting splice site strengths.
Hi, I am trying to predit the splice site of an RNA virus artificially expressed in host genome. Because the organism I studied is not model organism, there is no...
Hi! I have a question whether the prediciton performance of 5'ss usage and 3'ss usage are same? I think the 3ss usage is more diffcult to predict. So if is...
Dear Authors, Thank you for the great tool. I am getting this kind of error when i try to run Pangolin on csv example input (brca.csv): ``` Using CPU [Line...
Pretty sure these files were accidentally committed.
The README and colab document refer to a need to install biopython, but I don't see that this package is used anywhere. This commit removes those references in the documentation...
Dear Authors, Thank you for the great tool. I want to implement an option to predict scores with batch size larger than 1. During my first tests I noticed, that...
Hi, What is the output of the custom usage script? Is it just the score/usage prediction from each tissue/model? I was expecting an output vector of size 12 but now...
Hi Team, While using a VCF file with wildcard character "*" in the allele field [Spanning-or-overlapping-deletions-allele](https://gatk.broadinstitute.org/hc/en-us/articles/360035531912-Spanning-or-overlapping-deletions-allele), Pangolin exits with error. Example entry: 3 60539233 . AAAATATAT AATAT,* 550 PASS ....
