Theodore S. Kapellos issues

Results 7 issues of


                                            Theodore S. Kapellos

SizeFactors() does not add size factors to SingleCellObject

Hi, I want to classify 1,047 cells from a Seurat object in 16 possible phenotypes and I used the cellassign package for that. I ran the below code, but I...

Heatmap of genes along DPT pseudotime

Sorry for posting this again, but unfortunately the previous thread was closed and I could not comment there. I want to create a heatmap of features along a DPT pseudotime...

Error at computeCommunProbPathway

Hi, thank you for this nice package. I am encountering an issue which has been archived in the old github repository. I expanded the CellChat database with the Omnipath resource...

Extraction of dendrogram feature order

Dear mixOmics team, I have run `cim()` and would like to extract the order of the features on the heatmap. I tried to re-run the function but could not succeed....

Parallelization error when optimizing parameters for NicheNet

Hi, I am implementing the Omnipath resources for NicheNet analysis on a Windows computer. I was optimizing the parameters for the model as shown below: ``` # Parameter optimization expression_settings_validation

Viral load analysis in host organism cells

Hi all, I was wondering whether there is a consensus about how to test viral infection of cell types in a scRNA-seq dataset. I have mapped my reads to viral...