Timothy Hendrickson

Failure when DICOM data does not have attribute 'AcquisitionDate'

11

### Summary log ``` INFO: Doing conversion using dcm2niix INFO: Converting /output_dir/sub-michaelmyers/ses-112921/anat/sub-michaelmyers_ses-112921_rec-normalized_run-01_T2w (208 DICOMs) -> /output_dir/sub-michaelmyers/ses-112921/anat . Converter: dcm2niix . Output types: ('nii.gz', 'dicom') 211207-14:57:18,631 nipype.workflow INFO: [Node] Setting-up "convert"...

Converting physiological recordings

5

### Summary I cannot seem to figure out how to convert physiological recordings present within the DICOM folder from a neuroimaging dataset. The physiological recordings are organized as one DICOM...

Problem Running Heudiconv

3

### Summary I am having difficulty converting my data to BIDS for a particular data set. In addition I am getting a strange error that I am not familiar with....

Cannot Open CIFTI File with wb_view

1

Hello, I used nibabel to load a CIFTI file. I then used that data and performed some statistics and calculations on it. I then attempted to save modified data as...

Trouble With CIFTI Files

1

Hello I am exploring how to use nibabel to manipulate CIFTI files. I currently have a parcellated time series (ptseries) in which I am attempting to extract the surface (left...

[nnUNet/PyTorch] PyTorch Libary Import Error with most recent release

4

Related to **nnUNet/PyTorch(s)** *(e.g. GNMT/PyTorch or FasterTransformer/All)* **Describe the bug** Within Docker container, typing `python main.py --help` produces a traceback error. ``` Traceback (most recent call last): File "main.py", line...

MRIQC failing during IQM computation stage

5

### What happened? I'm attempting to run MRIQC on a large batch of images (~1,800). A majority complete without issue but several fail during the IQM computation stage. The inputted...

I've completed training of each of the 5 folds for a task and am attempting to run `nnUNet_find_best_configuration`. However, when I attempt to run it I receive the following error:...

HCP Pipelines Improvements (ICAFIX, PostFix, RestingStateStats, TaskfMRIAnalysis, londitudinal/cross-sectional logic)

5

This pull request extends the existing bids apps HCP Pipeline by adding on ICAFIX, PostFix, and RestingStateStats. The TaskfMRIAnalysis portion has been started but has yet to be completed. Logic...

Hello, I ran into an issue with the fMRI volume portion of the bids apps, at first I thought there might be some sort error with the code, but eventually...