Tomas Bencomo
Results
11
issues of
Tomas Bencomo
The MA and PCA plots produced by DESeq2 lack any text labels. These labels are replaced by empty rectangles. The same issue occurs with JPEG and SVG files (only included...
https://github.com/brentp/somalier
It currently has the same values as the WES file. Figure out better resource levels for WGS
Right now the pipeline requires sample type be specified as `normal` or `tumor` - the upper case versions cause an error. Call `tolower()` on the `units` data frame in `common.smk`...
Software like SomaticSniper and VarScan perform the same job as Mutect2. Utilizing many different callers can catch variants that one caller may miss. Results from each caller would be aggregated...