Tobias Jakobi

Hi @HirokiU-RCAST, there are RNA models available in the tutorial for modified basescalling: https://github.com/nanoporetech/taiyaki/blob/master/docs/modbase.rst#download-and-unpack-training-data ``` pretrained (pre-trained models used for mapping reads) r941_dna_minion.checkpoint r941_rna_minion.checkpoint ```

I just tried `bedtools v2.30.0-48-g868a9a24` after cloning and compiling, the same error persists.

That makes sense, thank you for looking into that. It's a BED file produced by a third party tool; given that it worked with an older bedtools version I did...

Note: take care of off-target effects, siRNA should be unique

Yes, we agreed to push this module, just forgot to update the issue correspondingly.

Now under review in #81

Dear Kristoffer, thank you for your quick response. I am currently using the latest master branch version: ``` > packageVersion('IsoformSwitchAnalyzeR') [1] ‘1.11.3’ ``` Before that I was using 1.8.0 with...

**Short Update:** ``` Step 1 of 5 : Importing external sequence analysis... Step 2 of 5 : Analyzing alternative splicing... Step 3 of 5 : Prediciting functional consequences... Step 4...

Dear Kristoffer, Thank you for following up. When I follow your instructions I end up with version `1.11.3` not `1.9.3`. Is there another way of exactly installing that version? ```...

Dear @kvittingseerup, thank you for following up, sorry for the long delay. I was only able to "solve" it by specifically removing the problematic entries from the data structure. I've...