tivdnbos

Reports: adding multiple proteins to comma separated file

3

When multiple proteins are added to a report, a comma is used. This occurs even when the user prefers csv format instead of tab. Therefore, no major problems here: the...

We should check for project.xml completeness when running mpa portable. E.g. check number of opening and closing tags; if not equal, recreate file.

- Project Accession: [PXD017035] - URL Project: [https://www.ebi.ac.uk/pride/archive/projects/PXD017035] - PubMed Accession: [31816881]

Relevant output: ms2rescore.rescoring_engines.percolator // Percolator output: Exception caught: -num-threads option requires an integer between 1 and 128 ERROR ms2rescore.__main__ // Number of PSMs in original list (52729) does not match...

[FeatureRequest] EC visualisation: EC names instead of EC numbers in tree visualisations

1

(low priority)

Currently, it's only possible to download the three GO domains separately. It would be great to download them all at once.

[FeatureRequest] Replace J in peptide by L

1

When uploading a peptide list to Unipept, some search engines output a "J", this is either a "I" or "L". Could you implement that all the "J" are internally replaced...

Hi everyone, the Metaproteomics Initiative has started working on extending SDRF-Proteomics for metaproteomics, based on (and in collaboration with) the Genomics Standards Consortium (GSC; https://genomicsstandardsconsortium.github.io/mixs/), who has existing metadata standards...