Christian Tischer
Christian Tischer
Hi @gregvonkuster & @bgruening, We are interested in running IJ2 code in Galaxy. Our idea was to write code that auto-generates the galaxy xml files for Imagej2 `Command`s, which is...
@carsen-stringer would it be possible to specify a simple input image file on the command line (instead of a whole directory)?
During the object and pixel classification workflow, when being at the object classification stage, pressing [P] does not do anything for me. MacOS 10.14.6 ilastik 1.3.3post2
Hi, When running below ImageJ macro... ``` newImage("Untitled", "8-bit black", 256, 254, 11); run("Bin...", "x=3 y=3 z=3 bin=Average"); ``` ... the resulting image has 3 z-planes, indicating that the Binner...
An outcome of [this hackathon](https://forum.image.sc/t/ome-ngff-spatial-omics-hackathon/57337/26) was that we would like to store tabular data in ome-zarr. I wanted to ask whether we should consider that whatever we store can be...
For some microscope modalities one collects 2D images, but it can make sense to still assign them a physical thickness along axis perpendicular to the 2D plane, e.g the axial...
@will-moore @joshmoore @constantinpape What is meaning of the channel dimension for the label images? I could imagine: 1. It _must_ be a singleton dimension, where only channel `0` exists 2....
@joshmoore @constantinpape With the current specs, is it possible to only store `labels` without an image? ``` └── image.zarr │ └── labels │ ├── .zgroup │ ├── .zattrs ```
@joshmoore @constantinpape We (ping @cgirardot) have been thinking a bit about a data management with ome.ngff and had a question/ concern. Let's say you start with an ome.zarr container that...
@axtimwalde @constantinpape @joshmoore Based on the latest posts of @glyg in https://github.com/ome/ngff/issues/28 I was wondering about the following. Let's say we have, e.g. a [FLIM](https://en.wikipedia.org/wiki/Fluorescence-lifetime_imaging_microscopy) data set. I think it...