Ben
Ben
Trying to run svtyper on a vcf produced by lumpy, using the docker container found via: docker pull halllab/svtyper:v0.7.1-3c5218a ``` $ docker run -v "/blue/project/trios/data:/blue/project/trios/data" halllab/svtyper:v0.7.1-3c5218a svtyper -B /blue/project/trios/data/trio3F15.sorted.bam -l...
I have a pipeline file with the following run command: ``` run { "%_*" * [trim] + "%_*" * [align] + "%_*" * [removeSupplementary] + "%_*" * [removeDuplicates] + branches...
When submitting a job to a cluster using slurm, the options at the top of bpipe.config get found and translated properly. Any options within the command brackets are ignored. i.e....
If one hits ctrl-C to stop a pipeline running, it shuts down everything. As in all user owned processes, including the shell. I'm running things in screen so I can...
I am attempting to create an interactive 3d plot of a umap using plotly, as the umap.plot functions appears to only be implemented for 2d plots at the moment. I'm...
The following code runs to completion, but no job is ever submitted to the cluster's queue. It prints what appears to be a valid jobScript, but when I return to...
There are a number of issues present that I think, indicate that there are multiple children of the sequence variant entity. When I go to browse the model (https://biolink.github.io/biolink-model/), the...
Took me a bit, but I can create menus alright. Cannot for the life of me figure out how to dynamically allocate URLs to each of the menus/submenus. I have...
Not sure how this is meant to work. Install of plugin, and WP pusher went fine. I created a new page, added shortcode for one of the examples, [git-github-jupyter url="https://github.com/GIScience/openrouteservice-examples/blob/master/python/ortools_pubcrawl.ipynb"]...
### Bug report unable to add a variant track to an existing browser **Bug summary** Create browser in previous code block. Create track dict for a variant, taking structure from...