Fong Chun Chan

Getting knitr::read_chunk to work with Nvim-R

8

I've started to use the `knitr::read_chunk` function to separate out the logic from my Rmarkdown files (see https://yihui.name/knitr/demo/externalization/). For instance, consider the following `test.Rmd` file: ```` --- title: "Testing the...

Mapping colon to semi-colon causing vimcmdline commands to not work

1

I installed vimcmdline using Plug by placing the following line into my `~/.config/nvim/init.vim`: ``` call plug#begin('~/.config/nvim/plugged') Plug 'jalvesaq/vimcmdline' call plug#end() ``` I was able to install the plugin. Loading up...

vim-markdown Clashes with vim-r-plugin

5

Hello, It seems that when vim-markdown and vim-r-plugin, there is some clashing happening and removes the syntax highlighting in rmarkdown code chunks. For instance, when it is just the vim-r-plugin:...

Handling of queries with no data

1

Hi, Is there an optimal approach to handling the scenario where an UpSetR query may have no data to work with. For instance: ```r library("UpSetR") movies

Labels appear at top of Render HTML from Rmarkdown File

1

Hi, When using the labels parameter in the scatterplot3js, the resulting labels appear in the top left corner of the render html file from the rmarkdown. I am not sure...

Hi there, Thanks for this package and your implementation of the randomized robust PCA method in the functon `rrpca`. Once you have applied `rrpca` to some training data to learn...

Using cuts for 1st and last column from f1 & last columns from f2 doesn't work

2

Hi, Perhaps I am misunderstanding how the cuts function works, but according to the documentation if one was to do this: `cuts f1 0 -1 f2` Should lead to 1st...

Hi, I've got a small panel (< 800 targets) that I am trying to run through PureCN just to see if it would work (I recognize that it isn't the...

In rmarkdown (at least v2.10+), there is support for submenus (https://github.com/rstudio/rmarkdown/pull/1426) in rmarkdown website. This doesn't seem to work in distill (v1.2) websites. For instance, consider the following `_site.yml`: ```yaml...

PureCN unintentionally filters out reads with supplementary alignments

3

In the `.calculateBamCoverageByInterval()` function: ```r .calculateBamCoverageByInterval