TING XIE

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computeCommunProb subscript out of bounds error

same error here, please help.

ERROR: netAnalysis_signalingChanges_scatter Error in outgoing[, i] <- centr[[i]][[x.measure]] :

Hi, I have 4 cellchat object merged together, two objects have 4 cellgroups less than the other two objects. I used liftcellchat function to lift up the cell idents the...

error addGeneIntegrationMatrix: formal argument "groupRNA" matched by multiple actual arguments

The error does not produce a log file.

error addGeneIntegrationMatrix: formal argument "groupRNA" matched by multiple actual arguments

myscRNA is a scRNA-seq seurat object and seRNA dataset is a RangedSummarizedExperiment object. I assume that my seurat object might not be compatible to use the addGeneIntegrationMatrix function. is it...

error addGeneIntegrationMatrix: formal argument "groupRNA" matched by multiple actual arguments

I converted the seurat object class to SingleCellExperiment, but still showed the same error. The error doesn't produce a log file. Please help, thanks

error addGeneIntegrationMatrix: formal argument "groupRNA" matched by multiple actual arguments

thanks for point out, after deleting groupRNA = "BioClassification" it shows: ArchR logging to : ArchRLogs/ArchR-addGeneIntegrationMatrix-77ea10f0aa20-Date-2023-06-29_Time-16-48-24.929366.log If there is an issue, please report to github with logFile! 2023-06-29 16:48:24.976265 :...

error addGeneIntegrationMatrix: formal argument "groupRNA" matched by multiple actual arguments

thank you, so I deleted groupList = groupList in this Unconstrained Integration, but got the below error messages, please help ArchR logging to : ArchRLogs/ArchR-addGeneIntegrationMatrix-77ea69184b40-Date-2023-06-30_Time-15-50-50.530609.log If there is an issue,...