Tim Millar

Codebraid just uses regular pandoc markdown but a user can specify different methods of running a code block using attributes. It provides a "notebook mode" using the attribute `.cb.nb` which...

I have written a small pandoc [filter](https://gist.github.com/timothymillar/1233a4cce6ca98a4242b3c9ef8604820) to covert pandoc ast to a codebraid "notebook"). This adds `.cb.nb` to each code block and if a a jupyter kernel is defined...

@mwouts I forgot to link the related [codebraid issue](https://github.com/gpoore/codebraid/issues/32). I personally think integration with codebraid could be really nice, some thing like `codebraid notebook ...`. But It may be the...

@mwouts personally the main thing that attracted me to jupytext was the ability to edit a script as a notebook without having to add additional metadata. My interpretation of #224...

I have also run into this issue. Just for clarity `"disableCompletionsFrom": ["LSP"]` is not the cause of the issue but just makes the symptoms more obvious. With `"disableCompletionsFrom": []` I...

The value `-2147483648` comes from interpreting the bytes of the reserved 'missing' value `b'\x80\x00\x00\x00'` as an integer. Within cyvcf2.pyx it should be able to do this using the `bcf_int32_missing` constant,...

> It's not obvious to me where the specification of what's accepted in terms of the parent array is though Good point, I've added some more documentation and examples which...

A consideration is whether specifying `by="genome"` should result in a dimension of length 1, or the absence of a dimension. A dimension of length 1 would potentially simplify some things...

That makes sense > but to always keep them if the user has specified explicit windows In this context would `by="genome"` be considered specifying an explicit window, or specifying no...

This looks good @tomwhite, I personally prefer the first option. I wonder if we should use a more specific argument name rather than `by`, just in case we end up...