Timo Sachsenberg

any hint on how we should resolve that?

Yeah sure! The only places I think it shouldn't be replaced is when citing the original publication (which used the old name). Would be great if you could do a...

We have a similar issue. Is there any chance to get this fixed in the main zlib repo?

Hi @nmoinvaz not sure if this helps here. The context of our issue is that we build the zlib dependency as part of a contrib repository and then use FindZLIB...

We have a similar issue regarding passing --cap-add SYS_PTRACE has there been any progress?

same problem here. any updates?

Thanks for the nice analysis. Separating them would indeed be cleaner but I see the problems you mentioned. Would it help much if empirical formula would expect all Isotopes instead...

For reference: cdk models Element and Isotope as distinct types https://cdk.github.io/cdk/1.5/docs/api/org/openscience/cdk/interfaces/IIsotope.html https://cdk.github.io/cdk/1.5/docs/api/org/openscience/cdk/config/IsotopeFactory.html (similar to our ElementsDB)

- does it make sense to include the MS file name annotation (as we do in a successful run)? - What about the tool? right now it fails for empty...

> Inside the algorithm code we don't necessarily know the file name the `spectra_file` parameter is optional, and the loading the contents with `.load(...)` doesn't store file name the `FeatureFinderAlgorithmMetaboIdent`....