Jeff Cole

docker container for c2go

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I was wondering if someone has worked on a docker container for c2go. I see in a few issues that it can be sensitive to changes in clang. Is there...

UniRep memory usage issue on CPU

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@sacdallago and @konstin When embedding ~500 small peptide sequences UniRep keeps taking up progressively more and more virtual memory which can cause my machine to crash. Here is a colab...

Issue running seqvec on example file in Google Colab

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I've tried getting seqvec to install on google colab, but have encountered some errors. I run the following command ``` !pip install seqvec ``` ``` ERROR: en-core-web-sm 2.2.5 has requirement...

database choice

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# Database choice The current version doesn't seem to necessarily allow for choosing which database to download / use as mentioned in #48 , so I have drafted this PR....

Hi, this is a really great tool! I'm only interested in using mitelman and fusiongdb, does fusion_report currently support this?