tianjiaozheng1997

Results 4 comments of tianjiaozheng1997

ValueError: shapes (7,78103) and (56262,999) not aligned: 78103 (dim 1) != 56262 (dim 0)

Hi, I have the same problem as you. My data is count data corrected with Soupx(used to correct for background in single-cell data), it contains decimals, so I run cnmf...

ValueError: shapes (7,78103) and (56262,999) not aligned: 78103 (dim 1) != 56262 (dim 0)

> Hi all, sorry for the bug. > > @johnjeang - ahh that is very strange, I didn't realize scanpy.pp.normalize_per_cell had that behavior. I can consider changing the default to...

ValueError: shapes (7,78103) and (56262,999) not aligned: 78103 (dim 1) != 56262 (dim 0)

> @tianjiaozheng1997 - can you share the command that is causing the error? It looks like there is a formatting error with the input data such that after filtering to...

ValueError: shapes (7,78103) and (56262,999) not aligned: 78103 (dim 1) != 56262 (dim 0)

I updated to the latest version of _cnmf_, but it still doesn't work, I don't know if it's because my number of cells is too small.Only 108 cells and 18,653...