Tiago Chedraoui Silva

https://rpubs.com/tiagochst/TCGAbiolinks_testing_new_projects - [X] BEATAML1.0-COHORT - [X] BEATAML1.0-CRENOLANIB - [X] CGCI-BLGSP - [ ] CGCI-HTMCP-CC - [ ] CMI-ASC - [ ] CMI-MBC - [ ] CMI-MPC - [ ] CPTAC-2...

tagMatrix upstream and downstream should be actual number error

1

If upstream and downstream are not in the attributes of the Granges, the arguments `downstream` and `upstream` are not working https://github.com/YuLab-SMU/ChIPseeker/blob/0e597a539bcffd1105e032d73d7365f303d64a0c/R/tagMatrix.R#L201 ```r library(ChIPseeker) library(ChIPseeker) library(TxDb.Hsapiens.UCSC.hg19.knownGene) library(clusterProfiler) package.version("ChIPseeker") txdb

getTagMatrix with Granges without type attribute gives an error

1

### Prerequisites Hello, https://guangchuangyu.github.io is not reachable. ### Describe your issue If Granges does not have an attribute type, the code does not work. As far as I know, it...

Spearman p-value inconsistency

5

Hello, Someone notice a weird p-value in my correlation plot. When I checked the spearman test from `stat_cor` is different from the one given by `cor.test`. The pearson seems to...

I'm not sure if this is a shiny problem or not. But `gvisMerge` function is not rendering in safari or Rstudio viewer. Code: https://gist.github.com/tiagochst/fdca88074181b276165ba34d5c6ff397 Safari: Chrome:

SummarizedExperiment::cbind

3

Hello, this is just a suggestion. If a have to SE, with the same data, but one has a metadata column that the other does not have. The package gives...

Data test exception

3

I'm trying to run the example data test. But I got the following problem. Which would be the problem ? Thanks in advance!