Tiago Chedraoui Silva
Tiago Chedraoui Silva
@todaroroad You can either access the GDC version which has the latest version of the follow-up ```r clinical_from_GDC
Sorry for the late reply. That information is available in the legacy database , but I wasn't able to find it in the newer version. Maybe you should contact the...
@ChrisAi89 Please, could you post the query code.
Yes I was able to, but I will need to contact GDC. Here is the problematic file: https://portal.gdc.cancer.gov/files/9412af8e-3c00-44de-a29b-b4801b65ca42 On Tue, Sep 6, 2022 at 1:01 PM ChrisAi89 ***@***.***> wrote: >...
@Pravithaks Please, could you post the query code ?
Hi, For the moment, you will need to prepare those two projects separately. query_samples
Could you send the complete code ?
The code was initially written to support only TCGA samples. I fixed the part giving problems for non-TCGA samples. It should be working now.
@biostars-nyc Could you send the query code? It is the first time that issue happens, so I need to see the query. I need to check if the query returned...
There are no such filters in the package `prior.malignancy = "no", Ajcc.clinical.m = "m0"`. What you can do is either use GDC interface to retrieve the barcode of the samples....