thugib

Many months ago I completed a Seurat analysis for scRNA-seq, and recently I just completed Signac analysis for ATAC-seq on the same tissue, and now I would like to integrate...

bad operand type for unary -: 'list'

7

I am running ingest.py. My source_documents folder has 3,255 documents (all .pdf's except for 7 .txt). When I run ingest.py it seems to get to 46 documents before the fail....

When I run peakHeatmap, I am getting the following error: `peakHeatmap(MYB3sortGR, TxDb = txdb, upstream = 500, downstream = 500, ignore_strand = TRUE)` preparing promoter regions... 2024-01-13 02:13:09 AM preparing...

no bigwig file; cannot stat

4

I am getting an error in the output when I run CutnRunTools. It is: cp: cannot stat '/home/crtools_output/51_S51/peakcalling/macs2.narrow/51_S51.cpm.norm.bw': No such file or directory However, it has already written 5 files...

some incorrect ontologies in output

2

I used the following AGI numbers AT1G05035 AT4G09200 AT5G03550 AT2G19610 AT2G38600 AT1G56470 AT4G25490 AT4G26730 AT4G15710 AT1G44542 AT4G07465 AT4G06320 AT5G02225 AT4G07290 AT3G19270 AT1G73000 AT3G02525 AT1G21230 AT4G08615 AT1G11925 AT2G01010 AT2G01024 AT2G34990 AT1G76210...