Thouis (Ray) Jones

erode/dilate offset integers by -1/+1

5

Booleans are fine. ``` >>> mahotas.erode(np.array([[0,0,0,1,1,1],[0,0,0,1,1,1],[0,0,0,1,1,1],], dtype=np.bool)) array([[False, False, False, False, True, True], [False, False, False, False, True, True], [False, False, False, False, True, True]], dtype=bool) >>> mahotas.dilate(np.array([[0,0,0,1,1,1],[0,0,0,1,1,1],[0,0,0,1,1,1],], dtype=np.bool)) array([[False,...

imread_multi() returns 1 image of 3997

6

I'm unsure what's wrong with this image, but imread.imread_multi() only returns one image. (As do several other python tiff wrappers). https://drive.google.com/file/d/0Bx-14WwcXFgebmlLUGYwV1ZUc0E/view?usp=sharing Sorry for the large size; I couldn't create a...

Seems to work on OSX, but haven't tested much. It at least builds and runs.

JIRA [IMG-1061] ExportToDatabase has password in plaintext

3

ExportToDatabase saves the password to the database in plaintext which presents users with a considerable security risk:\* You can see the password if you open the pipeline file\* You can...

I looked into this, briefly, and might be able to create some code based on setStartingValues, but I'm not a cplex expert.

MeasureObjectSizeShape: Add fractal dimensions

2

From CP TODO:# Dlogan 2008_07_25 Look into adding Fractal dimension metrics to MeasureAreaShape. See [http://cellprofiler.org/forum/viewtopic.php?f=4&t=445this Forum post] for a discussion. Original reporter: mbray Jira link: https://jira.broadinstitute.org/browse/IMG-865 Fix version: future Assignee:...