thom

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icon company UQ CCR, @FordeGenomics icon location Brisbane, Australia icon location Can't sing. Can't draw. Graying. Can code a little.

Results 2 comments of thom

Can the database be loaded into memory once to handle multiple paired reads files?

Late to the party, but if you copy your DB into `/dev/shm/` and run kraken2 with `--memory-mapping` then you only need enough RAM to fit your DB. not twice as...

Can the database be loaded into memory once to handle multiple paired reads files?

I'm afraid that there's a world of difference between the IO of a ramdisk and a hard drive (even an SSD) You can see in your first screenshot that the...