adegenet issues

Strata problem

7

Hi I am trying to create a strata for running an AMOVA. I am using a Genlight object but for some reason I am having the error below. Can somebody...

laiajulianamu

not adegenet

Error in fstat(b, fstonly = T) : could not find function "fstat"

3

Hi I am trying to run an fst analysis and I got the following error: Error in fstat(b, fstonly = T) : could not find function "fstat". I installed the...

nicolashazzi23

SNP weight values

I am working with adegenet and I am wondering about if there is a way to calculate SNP weight values. I am working with covariance matrices produced by ANGSD and...

Tannervanorden

Inconsistant results with adegenet::spca and adespatial::multispati

Hello, I have been looking into solutions for spatial multivariate analysis and tried both spca and multispati, but their results are vastly different. Isn't spca basically a wrapper to multispati?...

arthurdegrandpre

accessor nAll doesn't work on genindSummary

Because `genindSummary` doesn't appear to be a registered class (class designation slapped on [here](https://github.com/thibautjombart/adegenet/blob/master/R/basicMethods.R#L456)), using `nAll` on such an object doesn't work. It did in the past, though. 🤔 Not...

romunov

linkage mappers

value in the linkage mapper table are -1 can anyone suggent what coudl be the cost ![P](https://github.com/thibautjombart/adegenet/assets/122275218/d344a8bc-311d-422d-85a3-675c0d5ecf4f)

zinstan

method for sorting compoplot by population?

4

Is there a method for ordering the populations in a dapc object for plotting using compoplot()? It seems to be plotting alphabetically by strain name rather than by population, and...

MycoPunk